Introduction


Example of uses


Release notes & Stats


Citations


Credits


Related links


HeaderImage


RIP type

Database Statistics Release 1 (hg17)

RIP Class

# of loci

(unique/total)

# of loci

outside hg17

# of loci

with genotype

Loci in gene context

(P/E/I/IG*)

Disease- related loci

Alu

1625/2299

395

528

41/18/623/943

33

L1

407/534

132

81

7/9/130/261

15

SVA

63/74

4

31

7/3/22/31

Total

2095/2897

531

640

55/30/775/1235

51

 *: P: promoter up to 5kb; E: exon; I: intron; IG: intergenic region;


Major changes in Release 2 include:
  • dbRIP data release 2.0 for hg18 & hg19, which covers ~650 new RIPs found in the Venter diploid genome;
  • the use of new dbRIP ID system: unique numbers at fixed length (7 digits) with the 1st digit indicative of the TE type as shown below:
    • 1000000~1999999 for Alus
    • 2000000~2999999 for L1s
    • 3000000~3999999 for SVAs
    • 4000000~4999999 for ERVs
    • The remaining 5 numbers can be used for other types of REs and/or extra Alus if 1000000~1999999 runs out.
  • support for hg19;
  • addition of a position mapping utility for identifying overlap with RIPs in dbRIP

RIP type

Database Statistics Release 2 (hg18)

RIP Class

# of loci

(unique/total)

# of loci

outside hg18

# of loci

with genotype

Loci in gene context

(D/P/E/I/IG*)

Disease- related loci

Alu

2086/2708

858

526

6/7/24/765/1284

33

L1

598/800

299

123

2/2/10/183/401

15

SVA

77/87

18

31

1/1/4/29/42

HERV

10/10

2

6

0/0/0/5/5

/

Total

2771/3605

1177

686

9/10/38/982/1732

51

 *: D: downstream up to 1kb; P: promoter up to 1kb; E: exon; I: intron; IG: intergenic region;


RIP type

Database Statistics Release 2 (hg19)

RIP Class

# of loci

(unique/total)

# of loci

outside hg19

# of loci

with genotype

Loci in gene context

(P/E/I/IG*)

Disease- related loci

Alu

2086/2708

858

526

5/7/23/735/1316

33

L1

598/800

299

123

2/2/10/182/402

15

SVA

77/87

18

31

1/1/4/28/43

HERV

10/10

2

6

0/0/0/5/5

/

Total

2771/3605

1177

686

8/10/37/950/1766

51

 *: D: downstream up to 1kb; P: promoter up to 1kb; E: exon; I: intron; IG: intergenic region;


Last modified:Thursday, 28-Oct-2010 00:35:54 EDT .